Personal profile
Research Interests
I am a Microbial Ecologist with extensive research experience on root endophytes (including Arbuscular Mycorrhizal fungi (AMF)), saprotrophic fungi, soil microbiomes, molecular biology and bioinformatics.
Research Interests
My research interests lie at the intersection of microbial ecology and sustainable agriculture. I study how environmental factors and land management practices influence soil, rhizosphere, and phyllosphere microbiomes and their impact on soil health and ecosystem functioning. The goal of my work is to understand how these microbial communities impact plant-microbe interactions, nutrient cycling, and soil health, and to apply this knowledge to enhance crop health and environmental sustainability through agroecological practices.
Top research areas from the last five years
AllEcoSys: Agroecology living labs fostering prosperous and sustainable agri-food systems. https://www.agroecologypartnership.eu/allecosys
SUSALPS: Sustainable use of alpine and pre-alpine grassland soils in a changing climate. https://www.susalps.de/en/
Professional Activities: Peer Reviewer for
- Applied and Environmental Microbiology,
- Symbiosis
- Agriculture, Ecosystems and Environment
- Pedosphere
- Microbial Ecology
- One Earth
- Nutrient Cycling in Agroecosystems
Biography
My journey began in Colombia, a beautiful and diverse agroecosystem country, at the University of Los Andes in Bogotá, where I earned my bachelor’s and master’s degrees in microbiology. My early research focused on isolating and characterizing native bacterial strains (like Lysinibacillus sphaericus and Bacillus thuringiensis) for the biological control of mosquitoes and biodegradation of Hydrocarbons.
After working as a research assistant and laboratory instructor in plant pathology, I moved to Germany in 2006 on a DAAD fellowship. I pursued my Ph.D. at the Potsdam university in collaboration with the Leibniz Institute of Vegetable and Ornamental Crops (IGZ), where my doctoral research explored the interaction between root endophytic fungi and plants, analyzing their effect on plant growth and disease protection, e.g. against Verticillium dahliae. I also investigated the endophytic colonization of the basidiomycete Serendipita indica in tomato, barley and Arabidopsis, and its interaction with arbuscular mycorrhizal fungi (AMF).
Following my Ph.D. in 2011, I continued as a postdoc at IGZ and later at the Free University of Berlin. Here, I investigated the "memory" of saprotrophic fungi in response to temperature stress and isolated soil fungi from temperate grasslands to establish a core set of cultivable fungi for ecological studies related to soil quality and nutrient uptake.
In 2018, I joined the Helmholtz Centre Munich, where I participated in the SUSALPS project, investigating the impact of climate change and land use intensity on soil microbiomes in pre-alpine grasslands, and their relationships to nutrient cycling, soil quality and plant biodiversity.
Currently, I am a Postdoctoral Fellow at the University of Limerick's Environmental Microbiology Research Group (EMRG). My work focuses on the effects of agroecological practices on soil and leaf microbiomes, collaborating with farmers to co-create "living labs" for hands-on research in the frame of the AllEcoSyst project.
Related documents
Education/Academic qualification
PhD, Characterization of tomato root-endophytic fungi and analysis of their effects on plant development, on fruit yield and quality and on interaction with the pathogen Verticillium dahliae, University of Potsdam
2006 → 2010
Award Date: 2 Mar 2011
Certificate, -Agile Project Management. Professional Scrum Master™ I and II, WBS TRAINING
Oct 2024 → Dec 2024
Award Date: 10 Dec 2004
Masters, Physiologic and genetic characterization of Bacillus sphaericus native strains , Universidad de los Andes Colombia
1993 → 1998
Bachelor, Microbiology, Universidad de los Andes Colombia
1988 → 1992
External positions
Postdoc, Helmholtz Centre Munich. Institute of Comparative Microbiome Analysis, COMI. Neuherberg, Germany. https://www.helmholtz-munich.de/en/research/environmental-health-center/comi
2018 → 2024
Postdoc, Freie Universität Berlin. Institute of Biology. Plant, fungal and soil ecology lab. https://rilliglab.org/
2012 → 2017
Keywords
- S Agriculture (General)
- Microbial ecology
- Root fungal endophytes
- AMF
- Microbiomes
- Soil microbiology
- Microbe-plant interactiond
- Soil nutrient cycling
- Rhizosphere
- Phyllosphere
- N , P turnover
- Agroecology
- Living labs
Expertise related to UN Sustainable Development Goals
In 2015, UN member states agreed to 17 global Sustainable Development Goals (SDGs) to end poverty, protect the planet and ensure prosperity for all. This person’s work contributes towards the following SDG(s):
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SDG 2 Zero Hunger
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SDG 3 Good Health and Well-being
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SDG 4 Quality Education
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SDG 8 Decent Work and Economic Growth
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SDG 11 Sustainable Cities and Communities
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SDG 12 Responsible Consumption and Production
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SDG 13 Climate Action
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SDG 15 Life on Land
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SDG 17 Partnerships for the Goals
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Collaborations and top research areas from the last five years
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A trait-based framework to identify microbial keystone taxa for microbiome engineering
MICROBE Consortium, 2026, (Accepted/In press) In: Cell Reports Sustainability. 100615.Research output: Contribution to journal › Review article › peer-review
Open Access -
Plant–Soil Relationships Diminish Under Major Versus Moderate Climate Change in Subalpine Grasslands
Terry, T. J., Wilfahrt, P., Andrade-Linares, D. R., Abdalla, K., Berauer, B. J., Dannenmann, M., Garcia-Franco, N., Han, J., von Hessberg, A., Ramm, E., Kiese, R., Kögel-Knabner, I., Niu, Y., Schloter, M., Schulz, S., Wiesmeier, M. & Jentsch, A., Dec 2025, In: Ecology and Evolution. 15, 12, e72578.Research output: Contribution to journal › Article › peer-review
Open Access -
Fungal traits help to understand the decomposition of simple and complex plant litter
Leifheit, E. F., Camenzind, T., Lehmann, A., Andrade-Linares, D. R., Fussan, M., Westhusen, S., Wineberger, T. M. & Rillig, M. C., 1 May 2024, In: FEMS Microbiology Ecology. 100, 5, fiae033.Research output: Contribution to journal › Article › peer-review
Open Access -
Rapid loss of organic carbon and soil structure in mountainous grassland topsoils induced by simulated climate change
Garcia-Franco, N., Wiesmeier, M., Buness, V., Berauer, B. J., Schuchardt, M. A., Jentsch, A., Schlingmann, M., Andrade-Linares, D., Wolf, B., Kiese, R., Dannenmann, M. & Kögel-Knabner, I., Feb 2024, In: Geoderma. 442, 116807.Research output: Contribution to journal › Article › peer-review
Open Access -
Climate change and management intensity alter spatial distribution and abundance of P mineralizing bacteria and arbuscular mycorrhizal fungi in mountainous grassland soils
Andrade-Linares, D. R., Schwerdtner, U., Schulz, S., Dannenmann, M., Spohn, M., Baum, C., Gasche, R., Wiesmeier, M., Garcia-Franco, N. & Schloter, M., Nov 2023, In: Soil Biology and Biochemistry. 186, 109175.Research output: Contribution to journal › Article › peer-review
Open Access