Maria Doyle

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Maria Doyle

Dr.

20072025

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Bioconductor Community Manager

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  • Learning and teaching biological data science in the Bioconductor community

    Drnevich, J., Tan, F. J., Almeida-Silva, F., Castelo, R., Culhane, A. C., Davis, S., Doyle, M. A., Geistlinger, L., Ghazi, A. R., Holmes, S., Lahti, L., Mahmoud, A., Nishida, K., Ramos, M., Rue-Albrecht, K., Shih, D. J. H., Gatto, L. & Soneson, C., Apr 2025, In: PLoS Computational Biology. 21, 4 APRIL, 13 p., e1012925.

    Research output: Contribution to journal › Article › peer-review

    Open Access

  • Erratum: Correction: An international consensus on effective, inclusive, and career-spanning short-format training in the life sciences and beyond (PloS one (2023) 18 11 DOI: 10.1371/journal.pone.0293879.)

    Williams, J. J., Tractenberg, R. E., Batut, B., Becker, E. A., Brown, A. M., Burke, M. L., Busby, B., Cooch, N. K., Dillman, A. A., Donovan, S. S., Doyle, M. A., van Gelder, C. W. G., Hall, C. R., Hertweck, K. L., Jordan, K. L., Jungck, J. R., Latour, A. R., Lindvall, J. M., Lloret-Llinares, M. & McDowell, G. S. & 9 others, Morris, R., Mourad, T., Nisselle, A., Ordóñez, P., Paladin, L., Palagi, P. M., Sukhai, M. A., Teal, T. K. & Woodley, L., 2025, In: PLoS ONE. 20, 2, p. e0319613

    Research output: Contribution to journal › Comment/debate

    Open Access

  • The Galaxy platform for accessible, reproducible, and collaborative data analyses: 2024 update

    Abueg, L. A. L., Afgan, E., Allart, O., Awan, A. H., Bacon, W. A., Baker, D., Bassetti, M., Batut, B., Bernt, M., Blankenberg, D., Bombarely, A., Bretaudeau, A., Bromhead, C. J., Burke, M. L., Capon, P. K., Čech, M., Chavero-Díez, M., Chilton, J. M., Collins, T. J. & Coppens, F. & 110 others, Coraor, N., Cuccuru, G., Cumbo, F., Davis, J., De Geest, P. F., de Koning, W., Demko, M., DeSanto, A., Begines, J. M. D., Doyle, M. A., Droesbeke, B., Erxleben-Eggenhofer, A., Föll, M. C., Formenti, G., Fouilloux, A., Gangazhe, R., Genthon, T., Goecks, J., Gonzalez Beltran, A. N., Goonasekera, N. A., Goué, N., Griffin, T. J., Grüning, B. A., Guerler, A., Gundersen, S., Gustafsson, O. J. R., Hall, C., Harrop, T. W., Hecht, H., Heidari, A., Heisner, T., Heyl, F., Hiltemann, S., Hotz, H. R., Hyde, C. J., Jagtap, P. D., Jakiela, J., Johnson, J. E., Joshi, J., Jossé, M., Jum’ah, K., Kalaš, M., Kamieniecka, K., Kayikcioglu, T., Konkol, M., Kostrykin, L., Kucher, N., Kumar, A., Kuntz, M., Lariviere, D., Lazarus, R., Le Bras, Y., Le Corguillé, G., Lee, J., Leo, S., Liborio, L., Libouban, R., López Tabernero, D., Lopez-Delisle, L., Los, L. S., Mahmoud, A., Makunin, I., Marin, P., Mehta, S., Mok, W., Moreno, P. A., Morier-Genoud, F., Mosher, S., Müller, T., Nasr, E., Nekrutenko, A., Nelson, T. M., Oba, A. J., Ostrovsky, A., Polunina, P. V., Poterlowicz, K., Price, E. J., Price, G. R., Rasche, H., Raubenolt, B., Royaux, C., Sargent, L., Savage, M. T., Savchenko, V., Savchenko, D., Schatz, M. C., Seguineau, P., Serrano-Solano, B., Soranzo, N., Srikakulam, S. K., Suderman, K., Syme, A. E., Tangaro, M. A., Tedds, J. A., Tekman, M., Thang, W. C., Thanki, A. S., Uhl, M., van den Beek, M., Varshney, D., Vessio, J., Videm, P., Von Kuster, G., Watson, G. R., Whitaker-Allen, N., Winter, U., Wolstencroft, M., Zambelli, F., Zierep, P. & Zoabi, R., 5 Jul 2024, In: Nucleic Acids Research. 52, W1, p. W83-W94

    Research output: Contribution to journal › Article › peer-review

    Open Access

  • An international consensus on effective, inclusive, and career-spanning short-format training in the life sciences and beyond

    Williams, J. J., Tractenberg, R. E., Batut, B., Becker, E. A., Brown, A. M., Burke, M. L., Busby, B., Cooch, N. K., Dillman, A. A., Donovan, S. S., Doyle, M. A., van Gelder, C. W. G., Hall, C. R., Hertweck, K. L., Jordan, K. L., Jungck, J. R., Latour, A. R., Lindvall, J. M., Lloret-Llinares, M. & McDowell, G. S. & 9 others, Morris, R., Mourad, T., Nisselle, A., Ordóñez, P., Paladin, L., Palagi, P. M., Sukhai, M. A., Teal, T. K. & Woodley, L., Nov 2023, In: PLoS ONE. 18, 11 October, e0293879.

    Research output: Contribution to journal › Article › peer-review

    Open Access

  • Galaxy Training: A powerful framework for teaching!

    Hiltemann, S., Rasche, H., Gladman, S., Hotz, H. R., Larivière, D., Blankenberg, D., Jagtap, P. D., Wollmann, T., Bretaudeau, A., Goué, N., Griffin, T. J., Royaux, C., Bras, Y. L., Mehta, S., Syme, A., Coppens, F., Droesbeke, B., Soranzo, N., Bacon, W. & Psomopoulos, F. & 13 others, Gallardo-Alba, C., Davis, J., Föll, M. C., Fahrner, M., Doyle, M. A., Serrano-Solano, B., Fouilloux, A. C., van Heusden, P., Maier, W., Clements, D., Heyl, F., Grüning, B. & Batut, B., Jan 2023, In: PLoS Computational Biology. 19, 1, e1010752.

    Research output: Contribution to journal › Article › peer-review

    Open Access
View all 45 research outputs
  • 2 Organising a conference, workshop, ...