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Maria Doyle

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Maria Doyle

Dr.

 https://orcid.org/0000-0003-4847-8436
20072025

Research activity per year

Personal profile

Biography

Maria Doyle is global Community Manager for Bioconductor at the University of Limerick, where she leads international community programmes, training initiatives and strategic collaborations that support the development, sustainability and adoption of the Bioconductor open-source bioinformatics ecosystem. She also serves as ELIXIR-Ireland Training Coordinator. Her work spans research software, FAIR practices, open science, research training and community building. 

Maria collaborates with international initiatives including ELIXIR, The Carpentries and the Galaxy Project, with a particular interest in improving interoperability between research software ecosystems and supporting reproducible computational biology through community-driven infrastructure. She serves on the Bioconductor Community Advisory Board and has organised international conferences, workshops and hackathons. In 2025 she received the University of Limerick Faculty of Education and Health Sciences Research Culture Award for contributions to collaborative research culture and open science.

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  • Learning and teaching biological data science in the Bioconductor community

    Drnevich, J., Tan, F. J., Almeida-Silva, F., Castelo, R., Culhane, A. C., Davis, S., Doyle, M. A., Geistlinger, L., Ghazi, A. R., Holmes, S., Lahti, L., Mahmoud, A., Nishida, K., Ramos, M., Rue-Albrecht, K., Shih, D. J. H., Gatto, L. & Soneson, C., Apr 2025, In: PLoS Computational Biology. 21, 4 APRIL, 13 p., e1012925.

    Research output: Contribution to journal › Article › peer-review

    Open Access

  • Erratum: Correction: An international consensus on effective, inclusive, and career-spanning short-format training in the life sciences and beyond (PloS one (2023) 18 11 DOI: 10.1371/journal.pone.0293879.)

    Williams, J. J., Tractenberg, R. E., Batut, B., Becker, E. A., Brown, A. M., Burke, M. L., Busby, B., Cooch, N. K., Dillman, A. A., Donovan, S. S., Doyle, M. A., van Gelder, C. W. G., Hall, C. R., Hertweck, K. L., Jordan, K. L., Jungck, J. R., Latour, A. R., Lindvall, J. M., Lloret-Llinares, M. & McDowell, G. S. & 9 others, Morris, R., Mourad, T., Nisselle, A., Ordóñez, P., Paladin, L., Palagi, P. M., Sukhai, M. A., Teal, T. K. & Woodley, L., 2025, In: PLoS ONE. 20, 2, p. e0319613

    Research output: Contribution to journal › Comment/debate

    Open Access

  • The Galaxy platform for accessible, reproducible, and collaborative data analyses: 2024 update

    Abueg, L. A. L., Afgan, E., Allart, O., Awan, A. H., Bacon, W. A., Baker, D., Bassetti, M., Batut, B., Bernt, M., Blankenberg, D., Bombarely, A., Bretaudeau, A., Bromhead, C. J., Burke, M. L., Capon, P. K., Čech, M., Chavero-Díez, M., Chilton, J. M., Collins, T. J. & Coppens, F. & 110 others, Coraor, N., Cuccuru, G., Cumbo, F., Davis, J., De Geest, P. F., de Koning, W., Demko, M., DeSanto, A., Begines, J. M. D., Doyle, M. A., Droesbeke, B., Erxleben-Eggenhofer, A., Föll, M. C., Formenti, G., Fouilloux, A., Gangazhe, R., Genthon, T., Goecks, J., Gonzalez Beltran, A. N., Goonasekera, N. A., Goué, N., Griffin, T. J., Grüning, B. A., Guerler, A., Gundersen, S., Gustafsson, O. J. R., Hall, C., Harrop, T. W., Hecht, H., Heidari, A., Heisner, T., Heyl, F., Hiltemann, S., Hotz, H. R., Hyde, C. J., Jagtap, P. D., Jakiela, J., Johnson, J. E., Joshi, J., Jossé, M., Jum’ah, K., Kalaš, M., Kamieniecka, K., Kayikcioglu, T., Konkol, M., Kostrykin, L., Kucher, N., Kumar, A., Kuntz, M., Lariviere, D., Lazarus, R., Le Bras, Y., Le Corguillé, G., Lee, J., Leo, S., Liborio, L., Libouban, R., López Tabernero, D., Lopez-Delisle, L., Los, L. S., Mahmoud, A., Makunin, I., Marin, P., Mehta, S., Mok, W., Moreno, P. A., Morier-Genoud, F., Mosher, S., Müller, T., Nasr, E., Nekrutenko, A., Nelson, T. M., Oba, A. J., Ostrovsky, A., Polunina, P. V., Poterlowicz, K., Price, E. J., Price, G. R., Rasche, H., Raubenolt, B., Royaux, C., Sargent, L., Savage, M. T., Savchenko, V., Savchenko, D., Schatz, M. C., Seguineau, P., Serrano-Solano, B., Soranzo, N., Srikakulam, S. K., Suderman, K., Syme, A. E., Tangaro, M. A., Tedds, J. A., Tekman, M., Thang, W. C., Thanki, A. S., Uhl, M., van den Beek, M., Varshney, D., Vessio, J., Videm, P., Von Kuster, G., Watson, G. R., Whitaker-Allen, N., Winter, U., Wolstencroft, M., Zambelli, F., Zierep, P. & Zoabi, R., 5 Jul 2024, In: Nucleic Acids Research. 52, W1, p. W83-W94

    Research output: Contribution to journal › Article › peer-review

    Open Access

  • An international consensus on effective, inclusive, and career-spanning short-format training in the life sciences and beyond

    Williams, J. J., Tractenberg, R. E., Batut, B., Becker, E. A., Brown, A. M., Burke, M. L., Busby, B., Cooch, N. K., Dillman, A. A., Donovan, S. S., Doyle, M. A., van Gelder, C. W. G., Hall, C. R., Hertweck, K. L., Jordan, K. L., Jungck, J. R., Latour, A. R., Lindvall, J. M., Lloret-Llinares, M. & McDowell, G. S. & 9 others, Morris, R., Mourad, T., Nisselle, A., Ordóñez, P., Paladin, L., Palagi, P. M., Sukhai, M. A., Teal, T. K. & Woodley, L., Nov 2023, In: PLoS ONE. 18, 11 October, e0293879.

    Research output: Contribution to journal › Article › peer-review

    Open Access

  • Galaxy Training: A powerful framework for teaching!

    Hiltemann, S., Rasche, H., Gladman, S., Hotz, H. R., Larivière, D., Blankenberg, D., Jagtap, P. D., Wollmann, T., Bretaudeau, A., Goué, N., Griffin, T. J., Royaux, C., Bras, Y. L., Mehta, S., Syme, A., Coppens, F., Droesbeke, B., Soranzo, N., Bacon, W. & Psomopoulos, F. & 13 others, Gallardo-Alba, C., Davis, J., Föll, M. C., Fahrner, M., Doyle, M. A., Serrano-Solano, B., Fouilloux, A. C., van Heusden, P., Maier, W., Clements, D., Heyl, F., Grüning, B. & Batut, B., Jan 2023, In: PLoS Computational Biology. 19, 1, e1010752.

    Research output: Contribution to journal › Article › peer-review

    Open Access
View all 45 research outputs
  • 2 Organising a conference, workshop, ...