Biological LC/MS preprocessing and analysis with jABC, jETI and xcms

Christian Kubczak, Tiziana Margaria, Arno Fritsch, Bernhard Steffen

Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

Abstract

LC/MS is a successful analysis technique for the statistical analysis used in several branches of biology. It requires an intense screening and combination of the raw data, which is usually done with programs and libraries invoked by scripts in the domain-specific statistics language S or R. We show here how to model and implement this complex workflow in a service-oriented fashion, using the jABC service definition environment and jETI for remote service integration and execution.

Original languageEnglish
Title of host publicationProceedings - ISoLA 2006
Subtitle of host publication2nd International Symposium on Leveraging Applications of Formal Methods, Verification and Validation
PublisherIEEE Computer Society
Pages303-308
Number of pages6
ISBN (Print)0769530710, 9780769530710
DOIs
Publication statusPublished - 2006
Externally publishedYes
Event2nd International Symposium on Leveraging Applications of Formal Methods, Verification and Validation, ISoLA 2006 - Paphos, Cyprus
Duration: 15 Nov 200619 Nov 2006

Publication series

NameProceedings - ISoLA 2006: 2nd International Symposium on Leveraging Applications of Formal Methods, Verification and Validation

Conference

Conference2nd International Symposium on Leveraging Applications of Formal Methods, Verification and Validation, ISoLA 2006
Country/TerritoryCyprus
CityPaphos
Period15/11/0619/11/06

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