Gene Expression Atlas update - Value-added database of microarray and sequencing-based functional genomics experiments

Misha Kapushesky; Tomasz Adamusiak; Tony Burdett; Aedin Culhane; Anna Farne; Alexey Filippov; Ele Holloway; Andrey Klebanov; Nataliya Kryvych; Natalja Kurbatova; Pavel Kurnosov; James Malone; Olga Melnichuk; Robert Petryszak; Nikolay Pultsin; Gabriella Rustici; Andrew Tikhonov; Ravensara S. Travillian; Eleanor Williams; Andrey Zorin; Helen Parkinson; Alvis Brazma

doi:10.1093/nar/gkr913

Gene Expression Atlas update - Value-added database of microarray and sequencing-based functional genomics experiments

Misha Kapushesky, Tomasz Adamusiak, Tony Burdett, Aedin Culhane, Anna Farne, Alexey Filippov, Ele Holloway, Andrey Klebanov, Nataliya Kryvych, Natalja Kurbatova, Pavel Kurnosov, James Malone, Olga Melnichuk, Robert Petryszak, Nikolay Pultsin, Gabriella Rustici, Andrew Tikhonov, Ravensara S. Travillian, Eleanor Williams, Andrey ZorinHelen Parkinson, Alvis Brazma

Research output: Contribution to journal › Article › peer-review

Abstract

Gene Expression Atlas (http://www.ebi.ac.uk/gxa) is an added-value database providing information about gene expression in different cell types, organism parts, developmental stages, disease states, sample treatments and other biological/experimental conditions. The content of this database derives from curation, re-annotation and statistical analysis of selected data from the ArrayExpress Archive and the European Nucleotide Archive. A simple interface allows the user to query for differential gene expression either by gene names or attributes or by biological conditions, e.g. diseases, organism parts or cell types. Since our previous report we made 20 monthly releases and, as of Release 11.08 (August 2011), the database supports 19 species, which contains expression data measured for 19 014 biological conditions in 136 551 assays from 5598 independent studies.

Original language	English
Pages (from-to)	D1077-D1081
Journal	Nucleic Acids Research
Volume	40
Issue number	D1
DOIs	https://doi.org/10.1093/nar/gkr913
Publication status	Published - Jan 2012
Externally published	Yes

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Kapushesky, M., Adamusiak, T., Burdett, T., Culhane, A., Farne, A., Filippov, A., Holloway, E., Klebanov, A., Kryvych, N., Kurbatova, N., Kurnosov, P., Malone, J., Melnichuk, O., Petryszak, R., Pultsin, N., Rustici, G., Tikhonov, A., Travillian, R. S., Williams, E., ... Brazma, A. (2012). Gene Expression Atlas update - Value-added database of microarray and sequencing-based functional genomics experiments. Nucleic Acids Research, 40(D1), D1077-D1081. https://doi.org/10.1093/nar/gkr913

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title = "Gene Expression Atlas update - Value-added database of microarray and sequencing-based functional genomics experiments",

abstract = "Gene Expression Atlas (http://www.ebi.ac.uk/gxa) is an added-value database providing information about gene expression in different cell types, organism parts, developmental stages, disease states, sample treatments and other biological/experimental conditions. The content of this database derives from curation, re-annotation and statistical analysis of selected data from the ArrayExpress Archive and the European Nucleotide Archive. A simple interface allows the user to query for differential gene expression either by gene names or attributes or by biological conditions, e.g. diseases, organism parts or cell types. Since our previous report we made 20 monthly releases and, as of Release 11.08 (August 2011), the database supports 19 species, which contains expression data measured for 19 014 biological conditions in 136 551 assays from 5598 independent studies.",

author = "Misha Kapushesky and Tomasz Adamusiak and Tony Burdett and Aedin Culhane and Anna Farne and Alexey Filippov and Ele Holloway and Andrey Klebanov and Nataliya Kryvych and Natalja Kurbatova and Pavel Kurnosov and James Malone and Olga Melnichuk and Robert Petryszak and Nikolay Pultsin and Gabriella Rustici and Andrew Tikhonov and Travillian, {Ravensara S.} and Eleanor Williams and Andrey Zorin and Helen Parkinson and Alvis Brazma",

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Kapushesky, M, Adamusiak, T, Burdett, T, Culhane, A, Farne, A, Filippov, A, Holloway, E, Klebanov, A, Kryvych, N, Kurbatova, N, Kurnosov, P, Malone, J, Melnichuk, O, Petryszak, R, Pultsin, N, Rustici, G, Tikhonov, A, Travillian, RS, Williams, E, Zorin, A, Parkinson, H & Brazma, A 2012, 'Gene Expression Atlas update - Value-added database of microarray and sequencing-based functional genomics experiments', Nucleic Acids Research, vol. 40, no. D1, pp. D1077-D1081. https://doi.org/10.1093/nar/gkr913

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AU - Filippov, Alexey

AU - Holloway, Ele

AU - Klebanov, Andrey

AU - Kryvych, Nataliya

AU - Kurbatova, Natalja

AU - Kurnosov, Pavel

AU - Malone, James

AU - Melnichuk, Olga

AU - Petryszak, Robert

AU - Pultsin, Nikolay

AU - Rustici, Gabriella

AU - Tikhonov, Andrew

AU - Travillian, Ravensara S.

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AU - Zorin, Andrey

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AU - Brazma, Alvis

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Gene Expression Atlas update - Value-added database of microarray and sequencing-based functional genomics experiments

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